BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005D12LP1|AL425374
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig781 1311 0.0
>3x_Contig781
Length = 2349
Score = 1311 bits (659), Expect = 0.0
Identities = 688/697 (98%), Gaps = 3/697 (0%)
Strand = Plus / Plus
Query: 264 tattcgactcagtttcaaaagtacctg-acacagaaaagccttgtttggttggacgatcc 322
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4 tattcgactcagtttcaaaagtacctggacacagaaaagccttgtttggttggacgatcc 63
Query: 323 tgttgtttgtacagaagcgtgctgtttccgagacaagccctcgctaaaagaaaaatcaga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgttgtttgtacagaagcgtgctgtttccgagacaagccctcgctaaaagaaaaatcaga 123
Query: 383 ggacccagtttcctttttttttttttggatattttcctatcacttgccattcagaccgaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggacccagtttcctttttttttttttggatattttcctatcacttgccattcagaccgaa 183
Query: 443 agttatatttttycaacgtgacagatattcacagaacatctaatagaaagtmaggatttc 502
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 184 agttatattttttcaacgtgacagatattcacagaacatctaatagaaagtaaggatttc 243
Query: 503 aaggcgatgagcagtgcaagcmaagggaatgctactggaagtaagagcccagagcagctc 562
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaggcgatgagcagtgcaagcaaagggaatgctactggaagtaagagcccagagcagctc 303
Query: 563 ttagaggagagacggcacttgctagtacaattgtactgtatctcacaaattaccgagtta 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttagaggagagacggcacttgctagtacaattgtactgtatctcacaaattaccgagtta 363
Query: 623 aaamacgtggagaatcatgagagaatagggaaggagatagaaaagtttttagatcaacat 682
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaaaacgtggagaatcatgagagaatagggaaggagatagaaaagtttttagatcaacat 423
Query: 683 accttgatcaaggacaagcctatagatattaatgcattgcctaagtttaggccgagagac 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 accttgatcaaggacaagcctatagatattaatgcattgcctaagtttaggccgagagac 483
Query: 743 gtgtcgtcagataggaagctgaataacaggagtaagagttcttcaccgtcagaagtgaaa 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtgtcgtcagataggaagctgaataacaggagtaagagttcttcaccgtcagaagtgaaa 543
Query: 803 -gagaaattgaagaaacagcggtcgaaagacgtgtcgccaagtggaagcgaggaacatga 861
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cgag-aattgaagaaacagcggtcgaaagacgtgtcgccaagtggaagcgaggaacatga 602
Query: 862 tgtggatacgcagacactcccgcagtctcaaacaagggtagttccacgagttcagtcaca 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgtggatacgcagacactcccgcagtctcaaacaagggtagttccacgagttcagtcaca 662
Query: 922 gcagtmaattcagcaaagttccaggcaatctatggtg 958
||||| ||||||||||||||| |||||||||||||||
Sbjct: 663 gcagtcaattcagcaaagttcaaggcaatctatggtg 699
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,330
Number of Sequences: 1807
Number of extensions: 14330
Number of successful extensions: 223
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)